PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9KG534700.3.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 325aa MW: 35369.6 Da PI: 5.6096

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG534700.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.7	1.6e-11	145	192	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ + f L +++P + +K +K++ L ++eY+k+L+ Pavir.9KG534700.3.p 145 QEHVIAERKRREKLQQQFVALATIVPDL-----TKTDKISLLGSTIEYVKQLE 192 5799*********************9.....9***************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.821	142	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.4E-9	145	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-15	146	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.1E-14	146	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.29E-10	147	196	No hit	No description
SMART	SM00353	1.8E-11	148	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MDELNQWRSH PDPEDELAYM YGQQDEHAGM HQHFAERLPE QQQYYAPPTP MAPPRPNPIC 60 PSQPHQQAGS SFPAGFGVPA LPIQPFGALA VNSEQGQPSS SSSILSFGGQ PPSTLNFSGG 120 DWPDGIEAVQ QQVPERRIRA HWNTQEHVIA ERKRREKLQQ QFVALATIVP DLTKTDKISL 180 LGSTIEYVKQ LEDKVKTLKG QSAWRTSDPT VFENKCRISN ENNSDGSGSS GSAFGAGGGF 240 SPTVEASIHG DTVLLKIWCK EGRGVLVMII SELENQGLSI INTSVLPFTD SCLNITITAK 300 IAEGFSTTVE LVRKLTSALR GFST*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	155	ERKRRE
2	151	156	RKRREK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004987096.2	1e-153	PREDICTED: transcription factor bHLH25-like
TrEMBL	K3ZEU0	1e-114	K3ZEU0_SETIT; Uncharacterized protein
STRING	Si025088m	1e-114	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	4e-31	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pavir.9KG534700.3.p